PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24426.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 589aa    MW: 64685.7 Da    PI: 6.1405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24426.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07116136526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 lC+ffa+ G+C  G++CkF H+
  KFK24426.1 116 LCKFFAK-GWCMKGNSCKFLHV 136
                 8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.009111138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028111137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5116140IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5116136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSDSDMDIDD DDVQVQEQWR QEAAHTIAGE SQLLNRPIQA SNLHNDVKRS FKNVDKVQTL  60
AEDKGNSQPN ISGNTEKNTK LGDEKGITLS RFPAPGITPN SFSLVKESEQ KRAALLCKFF  120
AKGWCMKGNS CKFLHVKENL NHTSQQQVVY NMAGSSYIQS DEGRRTLDIK EGVRVSQISE  180
NGKTSLHTRE GISFLNHPGS QRVFPSPNEM HFMSLYGNMG RESLNQKCGA DVTENRSVVI  240
NNSNSVALRS SFVHEHGSSI TSYGKSDMGS SGPAWTGSLF SSAPTNEGGS TLRPCENRNN  300
IYGSGSLPML QGISVSSGQD AEGYNTSNKE KVSSNDWEPS EPFQPSFTIP PYILPSSDAL  360
YDPFMDIENL EDKSLEAPLS SIGKQAWKNS QQEEDGDSAS GSQARENDDK ISSCSQIQHQ  420
ETVARKSLEA YGGVEGVATS VVDQNDASTP SKEISSVVAA ENRVVLKRSK PVGHDAWHKS  480
DGSSYKKIVK SDEVDGEVRS DAGMKVMRQF RTAVVENIKE MLKPLWREGR LSKDVHNMIV  540
KKAAEKVVSA AVQFHQVPTD TESVEQYLGL SATKIVKLVE GYAEKYGKH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881309.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A087G3H40.0A0A087G3H4_ARAAL; Uncharacterized protein
STRINGA0A087G3H40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]