PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24450.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 104aa    MW: 12259.3 Da    PI: 9.7254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24450.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.81.9e-15494299
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXXX CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekikr 99
                  F + ly +led++l+++isws++++sfv++d++e+ ++ +   +  + +  + R L + gF+kvk +++         eF hk+ F +g+ el+ek++ 
    KFK24450.1  4 FNSDLYGVLEDPSLESIISWSKSNKSFVIWDPKELIDRGILAQYCYQDLPMLFRFLRLHGFTKVKGSRH--------LEFGHKKyFARGHPELMEKLQL 94
                  8889****************************999887666667778899999*************996........6****9989********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.9E-11195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.74E-15292IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-16393IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-14493IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MLQFNSDLYG VLEDPSLESI ISWSKSNKSF VIWDPKELID RGILAQYCYQ DLPMLFRFLR  60
LHGFTKVKGS RHLEFGHKKY FARGHPELME KLQLEVAEKI KKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694504.11e-32heat stress transcription factor A-4a
TrEMBLA0A087G3J86e-71A0A087G3J8_ARAAL; Uncharacterized protein
STRINGA0A087G3J89e-72(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-17HSF family protein