PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24548.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30893.8 Da    PI: 8.3875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24548.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19130184256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  KFK24548.1 130 RKKLRLSKDQSVVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 184
                 677889***********************************************98 PP
2HD-ZIP_I/II121.73.6e-39130219191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+ +LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l
   KFK24548.1 130 RKKLRLSKDQSVVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 219
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.6E-293100IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.8E-18108184IPR009057Homeodomain-like
SuperFamilySSF466891.46E-18119187IPR009057Homeodomain-like
PROSITE profilePS5007116.973126186IPR001356Homeobox domain
SMARTSM003895.6E-17128190IPR001356Homeobox domain
CDDcd000862.58E-15130187No hitNo description
PfamPF000463.1E-16130184IPR001356Homeobox domain
PRINTSPR000317.1E-6157166IPR000047Helix-turn-helix motif
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PRINTSPR000317.1E-6166182IPR000047Helix-turn-helix motif
PfamPF021837.7E-8186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-23186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLMGKEDLGL SLSLGFAQTQ THHPLQLNLK PTSSSMSNLN MFPWNQTFVP SSDHQNQQHF  60
LKKIDVNSLP STVECEEETG VSSPNSTISS TVSGKRRSDR EDDVDITLDR SSSPRGASDE  120
EEDYGGEACR KKLRLSKDQS VVLEDTFKEH NTLNPKQKLA LAKKLGLTAR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCVE KLTEENRRLE KEAAELRALK LSPRLYGQMS PPTTLLMCPS  240
CERVAGPSNH NHNHNHNQRA VSLSPWLQMS HGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284270.11e-172homeobox-leucine zipper protein HAT1
SwissprotP466001e-168HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A087G3U60.0A0A087G3U6_ARAAL; Uncharacterized protein
STRINGA0A087G3U60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-141Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]