PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24583.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 269aa    MW: 30871.7 Da    PI: 10.2917
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24583.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731041.2e-3283162277
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgke 77 
                 +fqrlwseeDei+lLqG+++f++++gksp++d+++fyefvkk+i+f++sk+ql+eK+r+LKkK+ + +k+    + +gk+
  KFK24583.1  83 AFQRLWSEEDEIALLQGMLNFRKEKGKSPYEDTNEFYEFVKKCIQFEASKNQLMEKLRSLKKKYIGTRKNesvaKTNGKS 162
                 79****************************************************************99994432222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-2584164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTKKPLNPLK DPPPATCSDE VESLLLLNQR KLRRSPTLDL VKQSLSPSLL QTLRRRKGNA  60
KRAKKVTSGE DEKKTGEVTK KQAFQRLWSE EDEIALLQGM LNFRKEKGKS PYEDTNEFYE  120
FVKKCIQFEA SKNQLMEKLR SLKKKYIGTR KNESVAKTNG KSQRKTEKLD SVKQDLFSPL  180
PNGKSVQEDL EPQKTSDLFE SSFLVQSIAQ FGVDEASVIQ GWNSAPVESK KMIEERMRAL  240
RAKELEYLML KIQFLHEVTS MIAQGLKQM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391972.13e-76probable transcription factor At1g61730
TrEMBLA0A087G3Y10.0A0A087G3Y1_ARAAL; Uncharacterized protein
STRINGA0A087G3Y10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-52DNA-binding storekeeper protein-related transcriptional regulator