PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24588.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 318aa    MW: 36570.2 Da    PI: 4.5653
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24588.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.22.4e-2884178498
      DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 +  w+++De+ +L+G+++++++t+  + +d+dafy f+k+si ++++k+ql +Ki +LKk+f+++ +k+ + k  sf++++d ++f+ls++iWg+
  KFK24588.1  84 KISWTKNDELHILKGIVNYEDETKLRYRADWDAFYAFIKDSIVSNFTKKQLRNKISKLKKRFTDNLAKSGDSKGSSFTNSNDGEMFKLSMIIWGK 178
                 455*****************************************************************999999*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-2486177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQKFPSLITN FMGSINTDDS NIDCFEIRFN DRAVASSSHR TRKRVVVDED EVSEKETKLI  60
RKKPRTSTTT TTTTTLVTPP TLSKISWTKN DELHILKGIV NYEDETKLRY RADWDAFYAF  120
IKDSIVSNFT KKQLRNKISK LKKRFTDNLA KSGDSKGSSF TNSNDGEMFK LSMIIWGKKN  180
ETECDTNVNM DQGKDLALVE NEQNNESVEH KQMIENVEQG KEDLTNVEHA KINENVAQEE  240
DATYVEDEQI TENMAQEEKD LTNAEQGQSN ENVEQGQSND NVEQAEDVTY VEREQINQNV  300
EQGRDGEEEL VRRHCFRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087G3Y60.0A0A087G3Y6_ARAAL; Uncharacterized protein
STRINGA0A087G3Y60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-38DNA-binding storekeeper protein-related transcriptional regulator