PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK24730.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

C2H2

Protein Properties

Length: 551aa MW: 63766.8 Da PI: 5.4158

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK24730.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.9e-06	218	241	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+k Fs+ +n+k+H+ + H KFK24730.1 218 WTCRLCTKKFSTADNYKSHLELeH 241 58*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04781	7.6E-8	31	73	IPR006866	Domain of unknown function DUF627, N-terminal
Pfam	PF04780	2.0E-37	155	307	IPR006865	Domain of unknown function DUF629
PROSITE profile	PS50157	9.12	218	246	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	220	241	IPR007087	Zinc finger, C2H2
Pfam	PF04780	5.2E-39	304	450	IPR006865	Domain of unknown function DUF629

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MASSSSPLFN EANDLFAQQG NEDDVSFILQ ECFSRSATLS VLSADPMFDM AEQIGSLLYY 60 KKSLRKAKEG LRFFADSPVF KDDRERMESI IGLAELKITE LKNREKMESI IGLAELKITE 120 LKNRVCCAVE NDEEDVRELK ENEEMEFENE LVRSMRLYWN NSGLEFKKRF MRVGKADLRV 180 YIKDLFTDPG KDKDGREQEK AFERAFTYAK KNENWIVWTC RLCTKKFSTA DNYKSHLELE 240 HAASSRYDLP WRISEVLAQK ISVGGWKPVD TIAAVKMIQE QLASVKAFAY PNGWCSDWPL 300 AEHEERNLVC RAVDSLCDET RIKEKIDFDS QFSTLLLDKR LLHSKLDRYD DEGKIRLLNP 360 DVHYAKAQVR GDNIVSWFLD SVDEKFQVPK PIKEQNIVIW VAVLRAVQFT CRTLGTKHAK 420 RQHLTGYRTA LNEARQLCVS EYEKRKTAPE VRDVLEEALD PTFDLPDIKD CLKDIRNCVN 480 VTDDDEVLNC LDFLESAVNN KVGQIDLKML LIEDSRMKLL EVFTRLSGFD HRCYVRPYLK 540 SYLFASLSSQ A

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MASSSSPLFN EANDLFAQQG NEDDVSFILQ ECFSRSATLS VLSADPMFDM AEQIGSLLYY  60
KKSLRKAKEG LRFFADSPVF KDDRERMESI IGLAELKITE LKNREKMESI IGLAELKITE  120
LKNRVCCAVE NDEEDVRELK ENEEMEFENE LVRSMRLYWN NSGLEFKKRF MRVGKADLRV  180
YIKDLFTDPG KDKDGREQEK AFERAFTYAK KNENWIVWTC RLCTKKFSTA DNYKSHLELE  240
HAASSRYDLP WRISEVLAQK ISVGGWKPVD TIAAVKMIQE QLASVKAFAY PNGWCSDWPL  300
AEHEERNLVC RAVDSLCDET RIKEKIDFDS QFSTLLLDKR LLHSKLDRYD DEGKIRLLNP  360
DVHYAKAQVR GDNIVSWFLD SVDEKFQVPK PIKEQNIVIW VAVLRAVQFT CRTLGTKHAK  420
RQHLTGYRTA LNEARQLCVS EYEKRKTAPE VRDVLEEALD PTFDLPDIKD CLKDIRNCVN  480
VTDDDEVLNC LDFLESAVNN KVGQIDLKML LIEDSRMKLL EVFTRLSGFD HRCYVRPYLK  540
SYLFASLSSQ A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK24730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A087G4C8	0.0	A0A087G4C8_ARAAL; Uncharacterized protein
STRING	A0A087G4C8	0.0	(Arabis alpina)