PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK24741.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 407aa MW: 43134.2 Da PI: 9.1569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK24741.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2e-38	91	150	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ KFK24741.1 91 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 150 6789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-39	74	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MVFSSFPTYP DQSNWQQQHQ PITTTVGFTG NNINQQFLPH HPLPPQPQQT TPPLHHNGNG 60 GGLGGSGEPG GLIRPGSMAE RARLANVPLP ETALKCPRCD STNTKFCYFN NYSLTQPRHF 120 CKACRRYWTR GGALRSVPVG GGCRRNKRTK SSGGGGSSSS GNSKSQDSAT SNDQYHHRAM 180 ANNQMGPPSS STSLSSLLSS YNAGLIPGHD HNNNNNHNIL GLGSSLPPLK LMPPLDFTDN 240 FTLQYGAVSA PSYHLGGGSS GGGGGGTAAL LTGFDQWRFP ATHQQLPLIS GNLDNSSSSG 300 LYSFDNQNPG YGLVTEPGQY RPKNIFHNLA SSSSSSGSSA MVTATASQIA SVKMEDSNNQ 360 LNLSRQLFGN EQQLWNIHGA SASTVAATTS SWSDVSNNFS SSSTSNI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MVFSSFPTYP DQSNWQQQHQ PITTTVGFTG NNINQQFLPH HPLPPQPQQT TPPLHHNGNG  60
GGLGGSGEPG GLIRPGSMAE RARLANVPLP ETALKCPRCD STNTKFCYFN NYSLTQPRHF  120
CKACRRYWTR GGALRSVPVG GGCRRNKRTK SSGGGGSSSS GNSKSQDSAT SNDQYHHRAM  180
ANNQMGPPSS STSLSSLLSS YNAGLIPGHD HNNNNNHNIL GLGSSLPPLK LMPPLDFTDN  240
FTLQYGAVSA PSYHLGGGSS GGGGGGTAAL LTGFDQWRFP ATHQQLPLIS GNLDNSSSSG  300
LYSFDNQNPG YGLVTEPGQY RPKNIFHNLA SSSSSSGSSA MVTATASQIA SVKMEDSNNQ  360
LNLSRQLFGN EQQLWNIHGA SASTVAATTS SWSDVSNNFS SSSTSNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK24741.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189646	0.0	AC189646.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125451.1	1e-176	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-167	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A087G4D9	0.0	A0A087G4D9_ARAAL; Uncharacterized protein
STRING	A0A087G4D9	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-139	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]