PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24883.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 233aa    MW: 24635.6 Da    PI: 8.8785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24883.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001180102123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C+k F +   L  H  +H
  KFK24883.1  80 YKCSVCDKGFASYQALGGHKASH 102
                 9**********999998888877 PP
2zf-C2H210.70.0017140159120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C++C+ksF +   L  H 
  KFK24883.1 140 HVCSICNKSFATGQALGGHK 159
                 79********9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-979102No hitNo description
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-1380104IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9380107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-9135162No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4138163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.073140162IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-12140164IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325140167IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055062Biological Processphosphate ion homeostasis
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MALEALNSPR LASPIPTLFQ DSVVGFHGSK GKRSKRSRSD FDRPSLKEDE YIALCLMLLA  60
RDGDRTRDLP APTTTTPMIY KCSVCDKGFA SYQALGGHKA SHRKNVTVAM SNGGDETSLS  120
TSSAVTTVSH GGGGGSVKSH VCSICNKSFA TGQALGGHKR CHYEGKNVGG GSSSVSNSDC  180
VGSTSHVSSG SHPHHHRGFD LNIPPVPEFS TVNGDEEVMS PMPAAKKVKH TFY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00622PBMTransfer from AT5G04340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24883.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452330.11e-106PREDICTED: zinc finger protein ZAT6-like
SwissprotO225331e-103ZAT6_ARATH; Zinc finger protein ZAT6
TrEMBLA0A087G4T11e-170A0A087G4T1_ARAAL; Uncharacterized protein
STRINGA0A087G4T11e-171(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.18e-76zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li Y, et al.
    The C2H2 zinc-finger protein SlZF3 regulates AsA synthesis and salt tolerance by interacting with CSN5B.
    Plant Biotechnol. J., 2018. 16(6): p. 1201-1213
    [PMID:29193661]
  6. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]
  7. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]
  8. Shi H,Liu G,Wei Y,Chan Z
    The zinc-finger transcription factor ZAT6 is essential for hydrogen peroxide induction of anthocyanin synthesis in Arabidopsis.
    Plant Mol. Biol., 2018. 97(1-2): p. 165-176
    [PMID:29675814]