PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24889.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 375aa    MW: 41370 Da    PI: 8.5603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24889.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044164186123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KFK24889.1 164 YQCKTCDRTFPSFQALGGHRASH 186
                 9***********99999998887 PP
2zf-C2H213.10.0003242264123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KFK24889.1 242 HECGICGAEFTSGQALGGHMRRH 264
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-12163188IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-8163186No hitNo description
PROSITE profilePS5015710.471164191IPR007087Zinc finger, C2H2
SMARTSM003550.028164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-8237264No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4240266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-11241266IPR007087Zinc finger, C2H2
SMARTSM003550.047242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93242266IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEAFQEAIAA SKEQSMILKG KRTKRQRPQS PMPFSISPPI VSSPAREIEE QSTDLDSKEN  60
ALGNNVENHK KDGVITSSSS SASWSSNTSQ TLKAEEDVEA QDIANCLILL AQGNPFHHHN  120
QQLKIPYHET INNNNNNTAY RFSSRRFLET SSSNGGGKAG YYVYQCKTCD RTFPSFQALG  180
GHRASHKKPK ATSFYSNLDL KKNIYENDSV SLVTTSTIYN NNKNTNNRSL VVYGKSNSNK  240
VHECGICGAE FTSGQALGGH MRRHRGAVVV AAPPPPTVTV ATTPANTELS LSSMSFDQIS  300
EGQDHLLMPV TKKAKKTVVS LDLDLNLPAP EDENRVNGFS FASKQKHEQE HQQTKQREEP  360
KSLVLSTPTL VDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398898.10.0zinc finger protein ZAT5
TrEMBLA0A087G4T70.0A0A087G4T7_ARAAL; Uncharacterized protein
STRINGA0A087G4T70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-156C2H2 family protein