PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24916.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 214aa    MW: 24493.2 Da    PI: 6.4048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24916.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07549346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT  Ed+ + +a  +++ g   +W++Ia  ++  ++  ++++++  
       KFK24916.1  5 QWTRSEDKMFEQALVLFPEGslnRWERIADQLQ--KSSGEVREHYEV 49
                     7*******************************9..8999*****965 PP
2Myb_DNA-binding431.1e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
       KFK24916.1  97 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.778155IPR017930Myb domain
SMARTSM007179.0E-7253IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-11459IPR009057Homeodomain-like
PfamPF002491.0E-5548IPR001005SANT/Myb domain
CDDcd001679.70E-6651No hitNo description
PROSITE profilePS5129418.26190146IPR017930Myb domain
SuperFamilySSF466892.44E-1692147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1693145IPR006447Myb domain, plants
SMARTSM007177.0E-994144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1096140IPR009057Homeodomain-like
CDDcd001676.36E-897142No hitNo description
PfamPF002491.7E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSLNRWE RIADQLQKSS GEVREHYEVL VHDVFEIDSG  60
RVDVPDYLDD SAAGWDSAGQ ISFGSKHGES ERKRGTPWTE NEHKLFLIGL KRYGKGDWRS  120
ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDASLAMP GSNMEWTGQN  180
ESSPVQVQQQ QQIMAEFGQQ MPNPGHFEDF GFRM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873168.11e-145transcription factor DIVARICATA
SwissprotQ8S9H76e-55DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A087G4W41e-158A0A087G4W4_ARAAL; Uncharacterized protein
STRINGA0A087G4W41e-159(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-131MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]