PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24969.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 211aa    MW: 24689.3 Da    PI: 9.8479
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24969.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.62.4e-1125107286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+++ + +L+ea  ++  +l+ g+ + ++W e++ ++ +r +     ++  qCk++++ l+k+yk +k   +       st+++fd+l+
  KFK24969.1  25 WSEDATATLLEAWGNRYVKLKFGNFRRNDWLEIAGVVNSRHCstdrPKTEAQCKNRIDTLKKKYKSEKSKLSP------STWRFFDRLD 107
                 *************************************77777332245899***************9998886......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2223108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEKTTTPPPP SSESHHTPVR REDWWSEDAT ATLLEAWGNR YVKLKFGNFR RNDWLEIAGV  60
VNSRHCSTDR PKTEAQCKNR IDTLKKKYKS EKSKLSPSTW RFFDRLDVLI GPVLKKSQTG  120
NSNLILTGSK LTGNSLEGDD DESKGSMYRE LAMVIVKFGE VYERIESRKQ KMMIELEKQR  180
MEVVKEVELQ RMNMSMEMQV EMEKSKQYMK R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332681.12e-83sequence-specific DNA binding transcription factor
TrEMBLA0A087G5171e-155A0A087G517_ARAAL; Uncharacterized protein
STRINGA0A087G5171e-156(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-76sequence-specific DNA binding transcription factors