PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24999.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 211aa    MW: 23249.2 Da    PI: 8.3387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24999.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-054870123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ Cg+ F++   L  H+++H
  KFK24999.1 48 YSCSFCGREFKSAQALGGHMNVH 70
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.83E-74574No hitNo description
Gene3DG3DSA:3.30.160.602.1E-44672IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-64871IPR007087Zinc finger, C2H2
SMARTSM003550.00174870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1544875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSMKLSPVVT RPSSEAGLFW PFGEERAFTA VEGQYGGGGG CMWPPRSYSC SFCGREFKSA  60
QALGGHMNVH RRDRARLKQQ SLSSSSTEQA TPLDQQDQQV LDVGSKVLVQ EDSRKHNGTK  120
REISDVCNNN VLEHYNDAVK TDLSVGLVSS EFDTKKKQLI NGSSTSWKRA KTDVSRLPMM  180
LGLVIGVSKI NGHHEELDLE LRLGADPPKV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124370229superman protein
2l1o_A1e-124370229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1073711e-106AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds.
GenBankAP0020301e-106AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankAY0888611e-106AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence.
GenBankCP0026881e-106CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423391.11e-129PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-127RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A087G5471e-156A0A087G547_ARAAL; Uncharacterized protein
STRINGA0A087G5471e-157(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]