PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25000.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 187aa    MW: 21284.9 Da    PI: 5.4216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25000.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.7e-3771071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+ dCv+apyf  eq +++fa+vhk+FGasnv+k l +lp ++r+da+ ++ yeA  r+ dPvyG+v++i++l+qq+ +l++e++ l+
  KFK25000.1   7 SCGACKFLRRKCNIDCVFAPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRNDAAITISYEALSRMCDPVYGCVAHIFALHQQVVSLQEEIEFLG 105
                 6***********************9978*******************************************************************9998 PP

      DUF260  99 ee 100
                 ++
  KFK25000.1 106 NQ 107
                 87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0456108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVAHGSSCGA CKFLRRKCNI DCVFAPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ  60
RNDAAITISY EALSRMCDPV YGCVAHIFAL HQQVVSLQEE IEFLGNQMGN FSYSTQSRSE  120
HNNMPEFQNQ MTMDTTSFVV DESLMNNKEL VVDGTNCCEG FFMNPEDVLV DHPWLQNMDY  180
YYNAPQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3351029105LOB family transfactor Ramosa2.1
5ly0_B3e-3351029105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873236.11e-107LOB domain-containing protein 33
SwissprotQ9LHS81e-104LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A087G5481e-139A0A087G548_ARAAL; Uncharacterized protein
STRINGA0A087G5481e-140(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-106LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]