PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25008.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 249aa    MW: 28312.8 Da    PI: 8.8844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25008.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-083075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + +  +   +W ++a++++ g+t  ++   + k
       KFK25008.1 30 SWTKEENKKFERALAVYADDtpdRWFKVASMIP-GKTISDVMRQYSK 75
                     7*****************99*************.******9998877 PP
2Myb_DNA-binding40.27.9e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
       KFK25008.1 132 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 176
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-42574IPR009057Homeodomain-like
PROSITE profilePS512938.3482679IPR017884SANT domain
SMARTSM007177.5E-82779IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-112984IPR009057Homeodomain-like
CDDcd001672.07E-73076No hitNo description
PfamPF002499.7E-73075IPR001005SANT/Myb domain
PROSITE profilePS5129418.311125181IPR017930Myb domain
SuperFamilySSF466897.11E-16127180IPR009057Homeodomain-like
SMARTSM007179.9E-11129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.2E-16129180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.9E-11129181IPR009057Homeodomain-like
CDDcd001679.19E-10132176No hitNo description
PfamPF002493.4E-10132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METLHPLLSH VPTSDHRFVV QEMMSLQSSS WTKEENKKFE RALAVYADDT PDRWFKVASM  60
IPGKTISDVM RQYSKLEEDL FDIEAGLIPI PGYNSATPCG FDELVSPRDF DLYRKRPNGA  120
RGLDQERRKG VPWTEEEHRR FLLGLLKYGK GDWRNISRNF VGSKTPTQVA SHAQKYYQRQ  180
LSGAKDKRRP SIHDITTVNL LNANLSRPDH GAESKLGFTD SDNAEKGVMF LGQHLSSVFK  240
STGANDYGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-162395175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195310.0AY519531.1 Arabidopsis thaliana MYB transcription factor (At5g05790) mRNA, complete cds.
GenBankBT0260540.0BT026054.1 Arabidopsis thaliana At5g05790 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332439.11e-167Duplicated homeodomain-like superfamily protein
RefseqNP_196198.11e-167Duplicated homeodomain-like superfamily protein
SwissprotQ8S9H79e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A087G5560.0A0A087G556_ARAAL; Uncharacterized protein
STRINGA0A087G5560.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-171MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]