PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25065.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 244aa    MW: 25773.9 Da    PI: 9.9075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25065.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-073760225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                k ++C  f+ t  C++Gd+C+F H
  KFK25065.1 37 KSKPCTKFYSTAGCPFGDNCHFLH 60
                7789******************** PP
2zf-CCCH36.11.1e-11210235127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ fa  G C yGdrC+FaHg+
  KFK25065.1 210 FKTKLCDKFAV-GSCTYGDRCHFAHGE 235
                 69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.993563IPR000571Zinc finger, CCCH-type
SMARTSM003560.493562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-63662IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-83760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.99E-15105181IPR004088K Homology domain, type 1
SMARTSM003223.2E-11111181IPR004087K Homology domain
PROSITE profilePS5008414.089112176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-15112180IPR004088K Homology domain, type 1
CDDcd001056.69E-13114176No hitNo description
PfamPF000138.3E-12114178IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.1E-16204239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441209236IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-8209235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8209239IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9210235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDARKRGRPE AASHDFNGGF KRSKQEMESN STGLGSKSKP CTKFYSTAGC PFGDNCHFLH  60
YVPGGYNAVA QMTNLGPPIA QASRNMQRSG DAGRFSGRGD PRQGSVSSFG ASATTKISVD  120
ASLAGAIIGK GGVHSKQICR QTGVKLSILD HERDPNLKNI ELEGTIEQIS AASEMVRELI  180
GRLGSGVAAA ARRPQGVGGF DGKPHPGNSF KTKLCDKFAV GSCTYGDRCH FAHGEAELRR  240
SGIA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873278.11e-139zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ9FG301e-138C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A087G5B31e-179A0A087G5B3_ARAAL; Uncharacterized protein
STRINGA0A087G5B31e-180(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-140C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]