PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25104.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 316aa    MW: 35860.3 Da    PI: 9.5977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25104.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32128186260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s  +++++ei+Y+g+Hnh+k
  KFK25104.1 128 EDGYNWRKYGQKQVKGSENPRSYFKCTYPNCITKKKVETSLVNGHITEIIYKGSHNHPK 186
                 7********************************************************85 PP
2WRKY104.27.1e-33248305259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +d k v++tYeg+Hnh+
  KFK25104.1 248 EDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKHVERAFQDAKSVITTYEGKHNHQ 305
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.629122187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26122187IPR003657WRKY domain
SuperFamilySSF1182904.32E-25124187IPR003657WRKY domain
SMARTSM007744.1E-33127186IPR003657WRKY domain
PfamPF031064.9E-23128185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-36232307IPR003657WRKY domain
SuperFamilySSF1182901.83E-28239307IPR003657WRKY domain
PROSITE profilePS5081136.013242307IPR003657WRKY domain
SMARTSM007745.2E-37247306IPR003657WRKY domain
PfamPF031061.7E-24248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDNQRAIPKF KSSIPSPLSP SPYFFMPPGL TQADLLDSPL LFTSSNILPS PTTGTFPAQS  60
LNWNNNGLLE DRNEIKPEED GKEHFDFSFT NNHTSPLFLP PLVVKPLIQP DVPKHEPRSL  120
HTSNRTSEDG YNWRKYGQKQ VKGSENPRSY FKCTYPNCIT KKKVETSLVN GHITEIIYKG  180
SHNHPKPQSI GRAASTGATY NVDFHKSNSH GNGKEFGEDE ASGKRKREEN MKEPRVVVQT  240
TSDIDILEDG YRWRKYGQKV VKGNPNPRSY YKCTFTGCCV RKHVERAFQD AKSVITTYEG  300
KHNHQIPTPR KCHTLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34128308878Probable WRKY transcription factor 4
2lex_A1e-34128308878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25104.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246999e-96AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
GenBankAK1175459e-96AK117545.1 Arabidopsis thaliana At5g07100 mRNA for SPF1 like protein, complete cds, clone: RAFL17-19-L10.
GenBankBT0263499e-96BT026349.1 Arabidopsis thaliana At5g07100 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871249.11e-165probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T31e-155WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLA0A087G5F20.0A0A087G5F2_ARAAL; Uncharacterized protein
STRINGA0A087G5F20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-142WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]