PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25137.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 249aa    MW: 28679.2 Da    PI: 7.8736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25137.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-0798117626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f+  G C++Gd+C FaHg
  KFK25137.1  98 CPAFRN-GACHRGDTCEFAHG 117
                 666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0792119IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-492118IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035622127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLKSVNPMAF YDIGEQQYPA LGYFVSKPSN AGAYDIDPPI PTVDDAIYGS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGACHRGD TCEFAHGVFE  120
YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQYEGKH RCRYAYRPVR TAAATRGGNG  180
DGVAGMRMDG EDQDTWRSPV KRVKSDLDSN EERMLLKCWS GMSLVDDHYE PSDFDLDLSH  240
IDWISKLVD
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444955.11e-163PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650361e-158C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A087G5I50.0A0A087G5I5_ARAAL; Uncharacterized protein
STRINGA0A087G5I50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-161C3H family protein