PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25305.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family EIL
Protein Properties Length: 429aa    MW: 48675.3 Da    PI: 5.5364
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25305.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3368.61e-11212627286
                 XXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3   7 mwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrng 105
                 mwkdq+l+++ k++k ++   +++ ++   s ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WW+e+v+fd+++
  KFK25305.1   1 MWKDQNLMEKFKKQKGRSN--NDV-VS--LSTHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWWQENVQFDQTA 94 
                 9********8888888754..554.44..45699***************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--H CS
        EIN3 106 paaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkk 203
                 p+a+s+y    l+++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+e wwge+g ++ + g    +kphdl+k
  KFK25305.1  95 PNAVSEY--LTLVAAAAELIEKEPSSLLHMLQELQDTTLGSLLSALMQHCVPPQRRFPLEKGIAPPWWPTGTEVWWGEQGsAAFENGXXXXRKPHDLRK 191
                 *******..57888888888999*********************************************************9999*************** PP

                 HHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3 204 awkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedveg 286
                  wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee+++            + +++++s++q+++  g
  KFK25305.1 192 SWKVSVLAAVIKHMSPDLGRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL------------NIKDLKISEDQDQEASG 262
                 ***************************************************987............44555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.1E-1101242No hitNo description
Gene3DG3DSA:1.10.3180.101.6E-63117246IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.36E-55120245IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MWKDQNLMEK FKKQKGRSNN DVVSLSTHRA EASRRKKMAR SQDSVLKYMM KIMEVCKAKG  60
FVYGIVPEKG KPITGSSDSL RRWWQENVQF DQTAPNAVSE YLTLVAAAAE LIEKEPSSLL  120
HMLQELQDTT LGSLLSALMQ HCVPPQRRFP LEKGIAPPWW PTGTEVWWGE QGSAAFENGX  180
XXXRKPHDLR KSWKVSVLAA VIKHMSPDLG RVRRLARQSK CLQDKMMAKE TDTWSRVLNQ  240
EEALLNIKDL KISEDQDQEA SGSKRKGGTM EPSKSVYTCQ NSSCPKSDVS FGFVNKNSRT  300
GHEVQCLYGS GSSSSQEPSQ TTGDTISVLE TVPSIGTNSN SEDDYSANSS AMDKQDNDDH  360
RNNANWMDYL WFERMQHELN SSRRFEDDDD DTTINLNQFP ESDQSENVNQ GTFSVWDMGC  420
EDKDIYMFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-561212444126Protein ETHYLENE INSENSITIVE 3
4zds_B3e-561212444126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5433770.0FJ543377.1 Arabis alpina BAC clone PEP1_BAC, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012603.10.0LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A087G6030.0A0A087G603_ARAAL; Uncharacterized protein
STRINGA0A087G6030.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]