PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25539.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 153aa    MW: 17452.8 Da    PI: 8.4702
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25539.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.73e-22171072100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F + lye+++d++ +++isws+ngnsf+v++++e+ ++vLp++ + + ++ F+R L ++gF+kv+++e+         e+++++F +g+ ell +i+
    KFK25539.1  17 FGNMLYEMVNDPTSDSVISWSQNGNSFIVWNQSELCSDVLPSFSQSEDLSVFIRRLGTFGFRKVDESEE--------FEYANDHFVRGRPELLAEIQ 105
                   66789************************************************************9996........6******************* PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                   ++
    KFK25539.1 106 KR 107
                   98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-2613107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-3113107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.39E-2215107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.0E-101740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-2217107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-105567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-106880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVRGGGSSRP IRQINVFGNM LYEMVNDPTS DSVISWSQNG NSFIVWNQSE LCSDVLPSFS  60
QSEDLSVFIR RLGTFGFRKV DESEEFEYAN DHFVRGRPEL LAEIQKRYIA SLPPDTLFFK  120
RKAIVDKGNA RIRALKLAMD ERNVTKNLSN LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-17410717129Heat shock factor protein 1
5d5v_B2e-17410717129Heat shock factor protein 1
5d5v_D2e-17410717129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.25e-49heat stress transcription factor A-4a
TrEMBLA0A087G6N71e-109A0A087G6N7_ARAAL; Uncharacterized protein
STRINGA0A087G6N71e-109(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.13e-25HSF family protein