PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25540.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 157aa    MW: 17873.3 Da    PI: 9.8897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25540.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind674.2e-21221094100
                   HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                   +klye+++d+++++++ ws+ngnsf+v+++ ef +++Lp+  + + ++ F+R L ++gF+kv +ee          e+++++F +g+ el+ +i+++
    KFK25540.1  22 TKLYEMVNDPSTDSIVLWSQNGNSFIVWNQYEFCNDILPSLSQSRVLSIFTRRLGTFGFRKVMSEE---------YEYANDNFVRGRPELVPEIQKR 109
                   79**************************************************************99.........78******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-2516109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.23E-2119109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-82043IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-2421109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-2022109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-87183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVRDNHGGGS SRSSKPYRSL WTKLYEMVND PSTDSIVLWS QNGNSFIVWN QYEFCNDILP  60
SLSQSRVLSI FTRRLGTFGF RKVMSEEYEY ANDNFVRGRP ELVPEIQKRY IASLPPDAFV  120
FKRAAEASRG IGRIRALKLA IDESAVTKNL SNLTLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-16810919129Heat shock factor protein 1
5d5v_B2e-16810919129Heat shock factor protein 1
5d5v_D2e-16810919129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.26e-54heat stress transcription factor A-4a
TrEMBLA0A087G6N81e-112A0A087G6N8_ARAAL; Uncharacterized protein
STRINGA0A087G6N81e-113(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-26HSF family protein