PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25586.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 413aa    MW: 46402.1 Da    PI: 4.2047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25586.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.79.4e-111149139
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                ++ienk  r v fskRr g+  KA+ L+ L +a++a++ 
  KFK25586.1 11 EKIENKNSRIVAFSKRRLGLYGKASDLCLLSGAKIAILA 49
                57**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.166348IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-11366IPR002100Transcription factor, MADS-box
CDDcd002664.00E-23483No hitNo description
SuperFamilySSF554551.09E-14581IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-6525IPR002100Transcription factor, MADS-box
PfamPF003194.5E-121263IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-62540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVGMKRKIAM EKIENKNSRI VAFSKRRLGL YGKASDLCLL SGAKIAILAT PVSSTPNASF  60
YSFGHSSVDS VVSAFLSNQR PRDDNIAAGK ELGFWWEDEK LAKSENPKEL SDAMDSISSL  120
LQNLKSFMEN RREYEDGLKK KDIVLHETHQ ALEQNKALNL QSCSASTCIH DDLPEKFEGF  180
IKKNEKENQI VVVSDNNNMN KDVVLHETHH QELDQNQTLS WSASIGIQDD LLVNLEGIDK  240
SSEEKDHIVA ISDNNNGLLG DLDGCNKELG LDEISDFETK NSEDISINYV SRKQNPCSDS  300
DEVVEDGALV IHKDFNEDNL HLSDLDENQT VASSDNNSNK VLPENLNGYN QELDLDEFFD  360
SVMNCEDFSL DDVWTNQNMC FGDSEAVEDG EAMVMHKDFD EDNLHFSDYF SMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398920.13e-91agamous-like MADS-box protein AGL97
TrEMBLA0A087G6T40.0A0A087G6T4_ARAAL; Uncharacterized protein
STRINGA0A087G6T40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-70AGAMOUS-like 99