PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25634.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 194aa    MW: 22400.7 Da    PI: 10.1096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25634.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.39e-3471321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgkdkevlskk 96 
                 lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k++++ ++ +++nr   +  +gyWk  gk++++++  
  KFK25634.1   7 LPIGYRFHPTEQELILHYLLRKAFASPLPS-SIIPVFDVFFSHPLTFPG--DQKEKQRYFFCKKRREVTS-NEHNRikiSSGDGYWKPIGKERQIIA-C 100
                 699*************************99.88***************4..4578899******998764.455553224669**************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 g+++g+++tL fy+ ++++ +kt+W m ey l
  KFK25634.1 101 GKTIGIRRTLSFYETNKSSFNKTRWNMIEYCL 132
                 99****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-394151IPR003441NAC domain
PROSITE profilePS5100537.0977152IPR003441NAC domain
PfamPF023658.3E-208132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MNGGMKLPIG YRFHPTEQEL ILHYLLRKAF ASPLPSSIIP VFDVFFSHPL TFPGDQKEKQ  60
RYFFCKKRRE VTSNEHNRIK ISSGDGYWKP IGKERQIIAC GKTIGIRRTL SFYETNKSSF  120
NKTRWNMIEY CLAGFASTKV CGEWAVYNVY ERKRSKVSKQ RKSRKDLSCI HFTVVSDHDE  180
TGPPPPSPPT SSDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-21513213140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453506.11e-108PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A087G6Y21e-143A0A087G6Y2_ARAAL; Uncharacterized protein
STRINGA0A087G6Y21e-144(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.12e-99NAC domain containing protein 84