PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25645.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 261aa    MW: 29717.7 Da    PI: 9.2149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25645.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-0597119223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++++++ +L  Hi+  H
  KFK25645.1  97 SCSVCSRVYPTSRLLSIHISEaH 119
                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.466994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355596119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.076134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATSMAVDTV AELGFPYWTP LRRRFPPDSP FFASGNVERE LLAKQVALDL TEDEINHLQK  60
FVETESRRIS CPIVGCPENL KSLDNFEDHY KARHTASCSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHRHLIDKHK FPTTFEFFKK TQPSKKQREK  180
IQRQRVPKLK HKEDVSSDAM EVEDKASMDG LVSALSTLTT SDTTPSTVSF GRRHGRGITF  240
VPRSVRREER TESSSAPGPT N
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
GenBankAK2283560.0AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196918.21e-174nucleic acid binding / zinc ion binding protein
TrEMBLA0A087G6Z30.0A0A087G6Z3_ARAAL; Uncharacterized protein
STRINGA0A087G6Z30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-140zinc ion binding;nucleic acid binding;zinc ion binding