PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK25657.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GeBP

Protein Properties

Length: 295aa MW: 32953.9 Da PI: 5.1859

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK25657.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	98.7	5.6e-31	60	154	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +r+w+ eDe+++L+Gl+d++ ktg + + d+d+f++fv +si ++vsk+q+++K+r+LK+ f + +k+++g++p f+++ d+++f++s+++Wg+ KFK25657.1 60 NRIWNGEDEVAVLKGLVDYRVKTGFHHKIDWDEFHRFVPGSILADVSKEQVLSKMRKLKRSFIAHLEKINQGNDPLFTRSTDSEAFGFSMMLWGK 154 79*******************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.2E-22	60	153	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MATPKRLDFS SPAASIDIED PFPSLPSISR RKSLEIPSAS DTVAKKKKKK KKLASSSGNN 60 RIWNGEDEVA VLKGLVDYRV KTGFHHKIDW DEFHRFVPGS ILADVSKEQV LSKMRKLKRS 120 FIAHLEKINQ GNDPLFTRST DSEAFGFSMM LWGKNDDDVA NGDMDNANQI ENGEEAVQED 180 QQVANGETLT ANGTESPPTR EIVVDTEDGT VGIESHDDDD GTAADELCAL RDAFETILSE 240 GLSDYHKKLQ LEKLMNLGTR KRKELSSEWK ELCVEEIKMH IKRLRFSAKL AGNDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	51	RRKSLEIPSASDTVAKKKKKKKK
2	45	51	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00061	PBM	Transfer from AT4G00270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK25657.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637720.1	5e-95	GLABROUS1 enhancer-binding protein-like 2
Swissprot	P0DKL0	1e-83	STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBL	A0A087G705	0.0	A0A087G705_ARAAL; Uncharacterized protein
STRING	A0A087G705	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	6e-84	DNA-binding storekeeper protein-related transcriptional regulator