PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25791.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 333aa    MW: 37714.3 Da    PI: 8.306
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25791.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-053557123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cgk F+    L +H+ tH
  KFK25791.1 35 FRCEECGKGFRYEKCLSNHQETH 57
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015713.093562IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-63567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.36E-93557No hitNo description
SMARTSM003550.0273557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576675.36E-9286313No hitNo description
SMARTSM003550.62291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619291318IPR007087Zinc finger, C2H2
PfamPF139123.7E-7291314IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKQQKQRDLS CHYSLRKNPK KKTQESPESM KKILFRCEEC GKGFRYEKCL SNHQETHLST  60
KQKEKVYEEE EEEPMKSLLS SSFSGVTKKK RSRVNRYKKT PLSCSTFLET HSVSAENDEE  120
LEVAESLILL SKSGSPKFVD GLKLVAEAID ANNPETPKGS YDSGCLSNKK QRKAGEFEYG  180
FVSNEQKLVE DRSSSYETSK GSASFLGDNT KMDQKLLEEG ISSDETSSFL GRKTEQKLRK  240
GGEFGTGFSS NEQKAMEESV SRYESESEHG VVGAMECAEM VPEANEENVE HQCKLCKKIF  300
SSYQALGGHQ TFHRISKSKS KKHYKSLRMS SWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25791.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873727.11e-109uncharacterized protein LOC9309795
TrEMBLA0A087G7D90.0A0A087G7D9_ARAAL; Uncharacterized protein
STRINGA0A087G7D90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.15e-87C2H2 family protein