PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25871.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 325aa    MW: 35888.1 Da    PI: 8.2435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25871.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-113662127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+++ rtG C++G++C+F+H++
  KFK25871.1 36 PGEPDCSYYIRTGLCRFGSTCRFNHPR 62
                5789*********************96 PP
2zf-CCCH39.31.1e-1283107327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+f+++tGtCk+G +CkF+H++
  KFK25871.1  83 QPDCQFYLKTGTCKFGVTCKFHHPR 107
                 689********************96 PP
3zf-CCCH38.22.4e-12129153327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +  C++f+rtG+Ck+G++CkF+H++
  KFK25871.1 129 EDDCSYFLRTGHCKFGGTCKFNHPQ 153
                 678********************97 PP
4zf-CCCH37.54.1e-12277303127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G  CkF+H++
  KFK25871.1 277 PGQPECQFYMKTGDCKFGTVCKFHHPR 303
                 5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6993563IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-53562IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-83762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-64063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-44162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62480108IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-581107IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-1083107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-683109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-486107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6126155IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004126154IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10129153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4132153IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22276304IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4282304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDFDSRVAIS REATSLSHLL NQNEIIGGVG LYPERPGEPD CSYYIRTGLC RFGSTCRFNH  60
PRDRKLVIAT ARIRGEYPER IDQPDCQFYL KTGTCKFGVT CKFHHPRNNA DIAGSVSVNA  120
LGYPLRPEED DCSYFLRTGH CKFGGTCKFN HPQSQSSNLM VSLSGSPVYS ALQSPTGQQS  180
YTWSRASFVA NTPRFASLIL PQGGGVSVQG WNAYNGQLGS LSPSGSDQNY RNQQQNDAKE  240
SSVSQGALFS SRFHSGNSVP LGYYASLARE DLFPERPGQP ECQFYMKTGD CKFGTVCKFH  300
HPRDRQAPAP DCVLSPVDLP LRPVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388721e-167AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846341e-167AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878456.10.0zinc finger CCCH domain-containing protein 57
SwissprotQ8GXX71e-155C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
SwissprotQ8L7N81e-155C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLA0A087G7L90.0A0A087G7L9_ARAAL; Uncharacterized protein
TrEMBLA0A087G7M00.0A0A087G7M0_ARAAL; Uncharacterized protein
STRINGA0A087G7M00.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-158zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]