PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26115.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 344aa    MW: 38395.9 Da    PI: 4.4109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26115.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.59.8e-101452139
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                ++ie k+ r   +skR ng++ KA  L+ L +a++av+ 
  KFK26115.1 14 EKIEKKTSRAPCYSKRCNGLFGKAAQLCLLSGAQIAVLA 52
                579**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-8665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.007651IPR002100Transcription factor, MADS-box
CDDcd002662.16E-20885No hitNo description
SuperFamilySSF554551.7E-12880IPR002100Transcription factor, MADS-box
PfamPF003197.9E-111556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVKRGGLKRK IPMEKIEKKT SRAPCYSKRC NGLFGKAAQL CLLSGAQIAV LATPMSDNSN  60
VSFFSFGHAS VDTVVSAFLS GKRPPFPSSD NMREDIGVCL TQKSLGLGFW WEDEALIRSQ  120
NPQELTHAVD SMRKLLKDAH RGEDLKNKET KNTNHQTLTN PAICCLPGDF LQNTDTQMMP  180
YSQDFSIMDN NNSYDLPADD IDDIMDLIDF ETTPESVLSD DELLKTTFES LLSDGVFKSP  240
QELQEFAATH LTNSDSMDTS IFSHSQPVQD GDLNRGLNDV FESTQEFQDF AASFLTSSDS  300
YNSMDPTMFS HSGPVKDVLQ NRGCNEDDLR FTDIFNELRT IVTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881008.14e-64agamous-like MADS-box protein AGL97
TrEMBLA0A087G8B30.0A0A087G8B3_ARAAL; Uncharacterized protein
STRINGA0A087G8B30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-60M-type_MADS family protein