PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26164.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26107.1 Da    PI: 3.976
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26164.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.31.1e-091552239
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                +i+ k+ r   +skR ng++ KA  L+ L +a++av+ 
  KFK26164.1 15 KIDKKTSRAPCYSKRCNGLFGKAAQLCLLSGAQIAVLA 52
                7999********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-8665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.867651IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-12865IPR002100Transcription factor, MADS-box
CDDcd002661.02E-16872No hitNo description
PfamPF003192.5E-101556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKRGGLKRK IPIEKIDKKT SRAPCYSKRC NGLFGKAAQL CLLSGAQIAV LATPMSDNSN  60
VSFFSFGHAS VDDNNSNSYA LSAENLDPAV GCFSDDFLQN TNTQMMANSE DFSIMDNNIA  120
LQAENFDDLD IMDDIDIMEL IDFDSTSESL LPSDEILKTT FESLQSDGVF ESTLELQEFA  180
ASLLTTSDSH DSMDLTMFSH SQPVQDGDLM LQNRGLSYDY LHFSDVFNEL APIVRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087G8G21e-172A0A087G8G2_ARAAL; Uncharacterized protein
STRINGA0A087G8G21e-172(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.14e-26AGAMOUS-like 99