PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26331.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 342aa    MW: 38601.9 Da    PI: 4.6267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26331.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.9e-48241492128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGf+F+P+d el+++yLk+k++g + ++ evi+++diy++ePwdLp k++ +++ ew+fF+ r kky++g +++ratk gyWkatgk+++v+s ++e+
  KFK26331.1  24 FPGFKFSPSDVELISYYLKRKMDGLEKSV-EVIPDADIYNLEPWDLPdKSIVKSDIEWFFFCARGKKYPHGLQNRRATKMGYWKATGKERDVKS-SSEV 120
                 69************************999.99***************767777788**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf+ grapkge+t+W+mhey +
  KFK26331.1 121 IGTKRTLVFHIGRAPKGERTEWIMHEYCM 149
                 ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5314165IPR003441NAC domain
PROSITE profilePS5100550.74423166IPR003441NAC domain
PfamPF023652.5E-2425148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEVEVEVEGV CKDTAEAVGA STVFPGFKFS PSDVELISYY LKRKMDGLEK SVEVIPDADI  60
YNLEPWDLPD KSIVKSDIEW FFFCARGKKY PHGLQNRRAT KMGYWKATGK ERDVKSSSEV  120
IGTKRTLVFH IGRAPKGERT EWIMHEYCMK EVPLDDALVV CRLRRNKDFH SCTSQKPPEP  180
NQVAANQLIL QNGATSSESP SDWDNMVDFY LAGEPGETLL NEMAETAENL QVPTDEDFFA  240
DILRDEIINL DETVKTGSTS NEIPTLESAS NAIRVLPLPN VIDRQMASLL EERPSQKKKG  300
TDTTESLSSC FVGLYSIKTV NRGRWDIILC VIAFIAMMFY LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-382516719166NO APICAL MERISTEM PROTEIN
1ut4_B8e-382516719166NO APICAL MERISTEM PROTEIN
1ut7_A8e-382516719166NO APICAL MERISTEM PROTEIN
1ut7_B8e-382516719166NO APICAL MERISTEM PROTEIN
3swm_A8e-382516722169NAC domain-containing protein 19
3swm_B8e-382516722169NAC domain-containing protein 19
3swm_C8e-382516722169NAC domain-containing protein 19
3swm_D8e-382516722169NAC domain-containing protein 19
3swp_A8e-382516722169NAC domain-containing protein 19
3swp_B8e-382516722169NAC domain-containing protein 19
3swp_C8e-382516722169NAC domain-containing protein 19
3swp_D8e-382516722169NAC domain-containing protein 19
4dul_A8e-382516719166NAC domain-containing protein 19
4dul_B8e-382516719166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421014.10.0PREDICTED: NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A087G8X90.0A0A087G8X9_ARAAL; Uncharacterized protein
STRINGA0A087G8X90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]