PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26522.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 195aa    MW: 21916 Da    PI: 8.8115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26522.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C+ksF +   L  H+++H
  KFK26522.1  4 HKCKLCSKSFCNGRALGGHMKSH 26
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681436IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HSMAKKKLVD SVYSSSSSSD GKSLVYGLRE  60
NPRKSFRVMN PDPDSFTVYH SETETEPESE EDPVRKRART EVSKKKKTKS KKQKNESPEP  120
ASSVSDGSPE QDLAMCLMML SRDSREVEVK PVLEPEVVEE MKPEKRRCSE LRRCVIDLNL  180
PPPQDGEFVT VVSAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005632.14e-93zinc finger protein ZAT9
TrEMBLA0A087G9H01e-138A0A087G9H0_ARAAL; Uncharacterized protein
STRINGA0A087G9H01e-139(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.14e-59C2H2-like zinc finger protein