PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26563.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 595aa    MW: 68594.5 Da    PI: 6.6014
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26563.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-1594160273
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                 W+ +evlaL+ +r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++ ++
  KFK26563.1  94 WCSDEVLALLGFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDLSN 160
                 ********************998.....9*******************************999998887643 PP
2trihelix96.23.1e-30450546186
    trihelix   1 rWtkqevlaLiearr............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+++evlaLi++r              m ++ +++++  plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+
  KFK26563.1 450 RWPRDEVLALINIRCsissmndddhkeGMISSPSSSSKSIPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 546
                 8*************97777776554444444444567999******************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-1092155No hitNo description
PROSITE profilePS500905.21593145IPR017877Myb-like domain
PfamPF138375.2E-19449547No hitNo description
CDDcd122035.03E-22449526No hitNo description
PROSITE profilePS500906.388450519IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MFDGGVPEQI HRFITSPPPP PPLPPHQPAA ERSLPFPVSY TSFNTNHHML NLDSRKIIHH  60
HHFHHHHDIK DGGATSEWLV HTDHRDGDNH HHPWCSDEVL ALLGFRSTVE NWFPEFTWEH  120
TSRKLAEVGF KRSPQECKEK FEEEERRYFN SNNNTNDLSN YNNKGNYRIL SEVEEFYHHG  180
HADDEHVSSE VGENQNKRNN ALEAKETIEE TGQDVLEENK RDQDQDQGQV EEAPMMENKI  240
KSVDNVIKVG NVEDDARSSS SSSLMMIMRD KKKKKRKKEK ERFGVLKGFC EGLVRNMIAQ  300
QEEMHKKLLE DMAKKEEEKM AREEAWKKQE MERLNKEIEI RAHEQAIASD RDTSIIKFIS  360
KFTDHGDDDD GNKVQISNAS QGSSLALSQT QESRKIQTSP LSKTLIPHTP LTSLEINEKS  420
LEPISTQTLK PKTRIPRLPK SDEKNDLGKR WPRDEVLALI NIRCSISSMN DDDHKEGMIS  480
SPSSSSKSIP LWERISKKML EIGYKRSAKR CKEKWENINK YFRKTKDVNK KRPLDSRTCP  540
YFHQLTALYS QPSTGATTRP EEDRVGSGDP AAMHVDADDV GEKTNVEYSG FDLEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276KKKKRK
2271277KKKKRKK
3273277KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643859.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A087G9L10.0A0A087G9L1_ARAAL; Uncharacterized protein
STRINGA0A087G9L10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]