PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26574.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 261aa    MW: 29774.8 Da    PI: 6.4264
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26574.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.86.6e-20212261151
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 k r++W  eLH++F+ aveqL G  +A+Pk+ilelm+ +++++e+v+SHLQ
  KFK26574.1 212 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQ 261
                 689******************.9***************************9 PP
2Response_reg47.69e-17381451108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++p+ r++l++ l++ +y +v  + + + a++ll++++  +D+ ++  + ++ d ++l++ei  e  ++p+i+++  ++ e +++ ++ Ga 
    KFK26574.1  38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIIMSKDDSVESVVDWMRNGAC 132
                   8999*******************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ pe+l+
    KFK26574.1 133 DYLIKPIRPEDLR 145
                   ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.97E-2334152IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-2435169No hitNo description
SMARTSM004482.0E-1036148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.21937152IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-1238146IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.46E-1239145No hitNo description
Gene3DG3DSA:1.10.10.607.6E-20209261IPR009057Homeodomain-like
SuperFamilySSF466894.84E-13209261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-19212261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY  60
QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VIIMSKDDSV  120
ESVVDWMRNG ACDYLIKPIR PEDLRMIFKH VAMKMQGRRS VAAGEAEEKV GGTVAKSSSV  180
GDSTIRNPNK RKRGIDEDHD HDRCDRTSTS KKRRVVWEDE LHKKFLAAVE QLGLANAVPK  240
KILELMNDPS ISRENVASHL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15208261154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863976.21e-113putative two-component response regulator-like APRR4 isoform X2
SwissprotQ9FJ161e-112APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M20.0A0A087G9M2_ARAAL; Uncharacterized protein
TrEMBLA0A087G9M40.0A0A087G9M4_ARAAL; Uncharacterized protein
STRINGA0A087G9M30.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-114pseudo-response regulator 4