PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26711.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 188aa MW: 22022.6 Da PI: 4.4927

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26711.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.7	1.8e-30	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++ke+yfF+k++ ++ rk t sgyW+++ + +ev++++++ KFK26711.1 8 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYFFVKKEDRE----RKGIETLSGYWEKSEE-EEVMEAGDRS 96 79***********************999..49*********6...56789***99875....667788999866.6777764444 PP NAM 100 .......vglkktLvfykgrapkgektdWvmheyrl 128 g +kt++fy g++p+g+ t W+m e+rl KFK26711.1 97 ynecihlEGRRKTFAFYIGKRPRGTITPWIMYEFRL 132 56667779************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-32	5	142	IPR003441	NAC domain
PROSITE profile	PS51005	31.678	8	161	IPR003441	NAC domain
Pfam	PF02365	6.6E-19	9	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNGRSMRLPP GFRFDPDDED LVFEYLAKKV LHRPMDFDLP ELRSCNVDPW DLLGEKNKEV 60 YFFVKKEDRE RKGIETLSGY WEKSEEEEVM EAGDRSYNEC IHLEGRRKTF AFYIGKRPRG 120 TITPWIMYEF RLLSSRATRW PSSSLSQGEL GKWRAVKVVV MEENEEEIEA DEHASDESDG 180 EEVVQAGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	6	133	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	6	133	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	6	133	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	6	133	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	6	133	18	146	NAC domain-containing protein 19
3swm_B	2e-17	6	133	18	146	NAC domain-containing protein 19
3swm_C	2e-17	6	133	18	146	NAC domain-containing protein 19
3swm_D	2e-17	6	133	18	146	NAC domain-containing protein 19
3swp_A	2e-17	6	133	18	146	NAC domain-containing protein 19
3swp_B	2e-17	6	133	18	146	NAC domain-containing protein 19
3swp_C	2e-17	6	133	18	146	NAC domain-containing protein 19
3swp_D	2e-17	6	133	18	146	NAC domain-containing protein 19
4dul_A	1e-17	6	133	15	143	NAC domain-containing protein 19
4dul_B	1e-17	6	133	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26711.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199895.3	1e-108	NAC domain containing protein 97
TrEMBL	A0A087GA09	1e-135	A0A087GA09_ARAAL; Uncharacterized protein
STRING	A0A087GA10	1e-112	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50820.1	5e-97	NAC domain containing protein 97