PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26767.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 423aa MW: 47134.5 Da PI: 6.8916

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26767.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.3	5.7e-20	34	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aL++a+++++ +lrrg+l++++W++v+ ++ + +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ KFK26767.1 34 CWTDEETAALVNAYKDKWFSLRRGNLRAADWDDVALAVssssSIGGPPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLFPILD 123 8********************************999888777888************************9999*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-20	33	125	No hit	No description
SMART	SM00595	0.0029	42	130	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MSIADDGSPI AMAIDPSSAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFSLRRGNLR 60 AADWDDVALA VSSSSSIGGP PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP 120 ILDAMEFAPV TPAVVETYDP DLDHDDDGND GFRVRSKRSG KFSGYNESPR EVGDGFGVRS 180 RVKSQNQMKM YGGFDSDHDS GLKRKYNGNN PKVSADFDVE SDDEIVLVPK ATRFKSHGKP 240 SLGEFSHSGG GGFPLKSFGD RSFGSHGFMK PKSFSKPEAN FSPEMDYDDE YDDDQGFQPR 300 VQNSRSGSRS NGFSRKDGMY PPRNSGVSNG YGSSSRFKQE QMNAAEVESD PIDDVVSSVK 360 MLTEMFVRVE NSKMEMMREM EKTRMEMELK HCQMMLESQQ QIIGAFAEAL SEKKSTNARR 420 PLS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MSIADDGSPI AMAIDPSSAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFSLRRGNLR  60
AADWDDVALA VSSSSSIGGP PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP  120
ILDAMEFAPV TPAVVETYDP DLDHDDDGND GFRVRSKRSG KFSGYNESPR EVGDGFGVRS  180
RVKSQNQMKM YGGFDSDHDS GLKRKYNGNN PKVSADFDVE SDDEIVLVPK ATRFKSHGKP  240
SLGEFSHSGG GGFPLKSFGD RSFGSHGFMK PKSFSKPEAN FSPEMDYDDE YDDDQGFQPR  300
VQNSRSGSRS NGFSRKDGMY PPRNSGVSNG YGSSSRFKQE QMNAAEVESD PIDDVVSSVK  360
MLTEMFVRVE NSKMEMMREM EKTRMEMELK HCQMMLESQQ QIIGAFAEAL SEKKSTNARR  420
PLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26767.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013721640.2	0.0	uncharacterized protein LOC106425450 isoform X2
Swissprot	O23550	1e-148	FRIP2_ARATH; Protein FIP2
TrEMBL	A0A087GA65	0.0	A0A087GA65_ARAAL; Uncharacterized protein
STRING	A0A087GA65	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-27	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]