PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26908.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Nin-like

Protein Properties

Length: 236aa MW: 27446.3 Da PI: 8.9437

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26908.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.3	1.1e-26	123	173	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+++++yF+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl KFK26908.1 123 QDKLELSEIRRYFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 173 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.041	108	195	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-22	126	173	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDPNSLPQLN SPKIENPYDP DSLYAMLEKL PPLESLLDTD DLKPNEGLDF QFHQFDGFED 60 FFENMDVNNN ISSDILMLTQ EPYISSGSAS PLAIQSNEHF GSDVRREKRT PKKKRNVKKT 120 KRQDKLELSE IRRYFDRPIM KAAKELNVGL TVLKKRCREL GIYRWPHRKL KSLNSLIRNL 180 KGVGMDEEVK NLEEHRILIE QEPDAELTDG TKKLRQACFK ANYKRRKSLG AIGDYY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26908.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119842.1	1e-124	PREDICTED: protein RKD4
Refseq	XP_013726811.1	1e-124	protein RKD4
Swissprot	Q9LVU8	1e-110	RKD4_ARATH; Protein RKD4
TrEMBL	A0A087GAK6	1e-173	A0A087GAK6_ARAAL; Uncharacterized protein
STRING	A0A087GAK6	1e-174	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-109	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]