PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26911.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 422aa    MW: 45865.2 Da    PI: 5.0234
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26911.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-39113172261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  KFK26911.1 113 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 172
                 7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-32109170IPR003851Zinc finger, Dof-type
PfamPF027018.1E-32115171IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64117171IPR003851Zinc finger, Dof-type
PROSITE patternPS013610119155IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPELGG VLTEPQNQNL VLLSDSCIVD DEEIADSGLG DDGGGDLSEK  60
EEKDNECGVE ESLSNESNNV ATASSITEKP ETTKAAKANE DGTCAQEAKL KKPDKILPCP  120
RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK NPASHYNRHQ  180
VSVTSAEAMQ KAAITDPNGT NLLTFGSDSV LCESMASGLN IADKSMLKTQ TGLQEPNEGL  240
KITVPLNPSS EEAGTINPLP KVPCFPGPPP TWPYAWNGVS WTVLPFYPPP AYWSCPGVSP  300
GAWNSFAWMP QPNSPSGSSP NSPTLGKHSR DESIAEPEAE ETEKSKPERC LWVPKTLRID  360
DPEEAAKSSI WETLGIKKDE KADTFGAFRS TNKEKSSLPG RRMDLQANPA ALSRSANFHE  420
SS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26911.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318708.10.0cycling DOF factor 2
RefseqNP_568567.10.0cycling DOF factor 2
RefseqNP_851106.10.0cycling DOF factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A087GAK90.0A0A087GAK9_ARAAL; Uncharacterized protein
STRINGA0A087GAK90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]