PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27013.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 156aa    MW: 17800.9 Da    PI: 8.499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27013.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-19964156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                r+k+ ++t+eq+++Le++F  n+++  + + +L+++lgL++rqV+vWFqN+Ra+ k
  KFK27013.1  9 RSKKKRLTQEQVRQLEKCFTVNKKLEPDLKIQLSNQLGLPQRQVSVWFQNKRARSK 64
                568889************************************************99 PP
2HD-ZIP_I/II100.21.8e-3211102293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqv vWFqn+RAR kt+ lE ++ +L+++++a  +++++Le++ve L++elk+
   KFK27013.1  11 KKKRLTQEQVRQLEKCFTVNKKLEPDLKIQLSNQLGLPQRQVSVWFQNKRARSKTQSLELQHGTLQSKLEAALSDKAKLEHQVEFLQDELKR 102
                  9***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-18467IPR009057Homeodomain-like
PROSITE profilePS5007117.346666IPR001356Homeobox domain
SMARTSM003896.2E-18870IPR001356Homeobox domain
PfamPF000461.3E-16964IPR001356Homeobox domain
CDDcd000862.40E-15967No hitNo description
Gene3DG3DSA:1.10.10.602.8E-181269IPR009057Homeodomain-like
PROSITE patternPS0002704164IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENSQSQSRS KKKRLTQEQV RQLEKCFTVN KKLEPDLKIQ LSNQLGLPQR QVSVWFQNKR  60
ARSKTQSLEL QHGTLQSKLE AALSDKAKLE HQVEFLQDEL KRSRNQLALF TNQDSPVENS  120
NFGSCEEGQA DQLVVFDELY ACFASNGHGS SSTSWV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076441e-152AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBankAK2292111e-152AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBankBT0159271e-152BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBankBT0219201e-152BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBankCP0026881e-152CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879304.11e-100homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN293e-97ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A087GAW11e-109A0A087GAW1_ARAAL; Uncharacterized protein
STRINGA0A087GAW11e-110(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-92homeobox protein 52