PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27107.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 154aa    MW: 16926.9 Da    PI: 9.1912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27107.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-162572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
       KFK27107.1 25 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 72
                     79******************************************9996 PP
2Myb_DNA-binding22.92e-0778105129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      +g++T +E+ l++++++qlG++ W++ a+
       KFK27107.1  78 KGSFTSDEERLIIQLHAQLGNK-WARMAA 105
                      799*******************.**9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.3182076IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-222375IPR009057Homeodomain-like
SMARTSM007171.6E-122474IPR001005SANT/Myb domain
PfamPF002493.2E-152572IPR001005SANT/Myb domain
SuperFamilySSF466899.77E-2426102IPR009057Homeodomain-like
CDDcd001672.91E-112772No hitNo description
PROSITE profilePS500906.07573104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-1276106IPR009057Homeodomain-like
SMARTSM00717977148IPR001005SANT/Myb domain
PfamPF002499.1E-678105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MMMYGGVGKD GGSTNHVDGG VMLKKGPWTA AEDEILAAYV RENGEGNWNA VQKNTGLARC  60
GKSCRLRWAN HLRPNLKKGS FTSDEERLII QLHAQLGNKW ARMAAQDVFE EAEALAGGGG  120
DRPPKRRQLT ASPPNHQISS NYNNNNNNDN FFSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-2022104182C-Myb DNA-Binding Domain
1msf_C1e-2022104182C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27107.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170597e-98AB017059.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K13P22.
GenBankCP0026887e-98CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankKC5440147e-98KC544014.1 Arabidopsis thaliana transcription factor MYB120 (MYB120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120026.11e-59PREDICTED: transcription factor MYB26-like
SwissprotQ94FL72e-59MY120_ARATH; Transcription factor MYB120
TrEMBLA0A087GB551e-111A0A087GB55_ARAAL; Uncharacterized protein
STRINGA0A087GB551e-112(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.11e-61myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]