PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27422.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 357aa    MW: 40184.3 Da    PI: 4.4942
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27422.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.66.1e-2091603128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra........tksgyWkatg 87 
                  G++F+P d+el+++yL +k++g+ +   ++i + ++y++ePw L+++++    ++ewy+F++r + ++     gk+++r+        +++g Wka  
  KFK27422.1   9 EGIHFEPYDDELIKDYLIPKLSGEGCY--DFIVHKNVYDMEPWLLDHNMDPffPKNEWYYFVTRVQVSEkkigYGKNAKRKiagdnndgIERGNWKANA 105
                 599**********************54..589999**********96554455778*****998776663333466777766788888888*****998 PP

         NAM  88 kdkevlskkgelvglkktLvfy.......kgrapkge.......ktdWvmheyrl 128
                 +++   +k+g+ +g k+tL++        ++++++g+       +++W+m ey l
  KFK27422.1 106 TTNIEDRKTGKIIGRKQTLTYTrsddspkRQKREEGSyvivpgsESSWIMTEYML 160
                 865555558999**********77776653444444355555559********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.4847177IPR003441NAC domain
SuperFamilySSF1019411.96E-239175IPR003441NAC domain
PfamPF023655.7E-149159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSDYYEEDEG IHFEPYDDEL IKDYLIPKLS GEGCYDFIVH KNVYDMEPWL LDHNMDPFFP  60
KNEWYYFVTR VQVSEKKIGY GKNAKRKIAG DNNDGIERGN WKANATTNIE DRKTGKIIGR  120
KQTLTYTRSD DSPKRQKREE GSYVIVPGSE SSWIMTEYML PEGENFQELV LCKIKIINKS  180
KKNHDEASTS TSTSTYHHHE SVLASSSSSE ACSSGTLIAA GEGNALLGHG SSVPTGSEEE  240
RGWIQYFDLP VDEGLSGLTA AGEGNAPLQI NEHVSALDTS SEKQPINETH REESENLGPK  300
STQEFLKELE ESLLGVNEPG SRVEEDKEEL LIYNKEELED LFNQFAALCP TKTSHTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608285.12e-68PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A087GC200.0A0A087GC20_ARAAL; Uncharacterized protein
STRINGA0A087GC200.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.17e-14NAC domain containing protein 88