PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27438.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 245aa    MW: 27913 Da    PI: 6.2879
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27438.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.99.8e-2491493128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra........tksgyWkatg 87 
                  G++F+P d+el+++yL +k++gk +    +i + d+y + Pw ++++++    ++ewy+F++r + ++    +gk+++r+        +++g W+a  
  KFK27438.1   9 EGIHFEPYDDELIKDYLIPKLSGKGCGD--FILHKDVYAMAPWLMEQNMDPffPKNEWYYFVTRTQVSQknigRGKKTKRQimetdddgIHRGNWRANA 105
                 599**********************655..89999**********96554455778******999887745555778888678888888779****997 PP

         NAM  88 kdkevlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                 ++ +++++ +g+ +g k+tL++    k+++++g++++W+m+ey l
  KFK27438.1 106 TT-DIKDRkTGKIIGRKQTLTYTrrnKKEKREGSESSWIMKEYML 149
                 75.5555548999**********766678999***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.6717166IPR003441NAC domain
SuperFamilySSF1019411.96E-249164IPR003441NAC domain
PfamPF023652.9E-159148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSDYYEEDEG IHFEPYDDEL IKDYLIPKLS GKGCGDFILH KDVYAMAPWL MEQNMDPFFP  60
KNEWYYFVTR TQVSQKNIGR GKKTKRQIME TDDDGIHRGN WRANATTDIK DRKTGKIIGR  120
KQTLTYTRRN KKEKREGSES SWIMKEYMLP GGENFQELVL CKINIYKSKK NHDHEASTST  180
STSTYHHHHH ESVLASSSSS EASSSGTSIA AGEGNAPLGH GSSVPTGSEE GIDWIQYLDL  240
TVEEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608285.18e-62PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A087GC360.0A0A087GC36_ARAAL; Uncharacterized protein
STRINGA0A087GC360.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-15NAC domain containing protein 88