PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27441.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 356aa    MW: 40121.4 Da    PI: 4.5875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27441.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-1891603128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra........tksgyWkatg 87 
                  G++F+P d+el+++yL ++++g+++   ++i + ++y++e w L+++++   +++ewy+F++r + ++     gk+++r+        +++g Wka  
  KFK27441.1   9 EGIHFEPYDDELIKDYLIPELKGESCY--DFIVHKNVYDMEAWLLDHNMDPffQKNEWYYFVTRVQVSEkkigYGKQAKRKiagdnndgIERGNWKANA 105
                 599*********************954..589999**********96554455889*****998766653333577888866788888888*****998 PP

         NAM  88 kdkevlskkgelvglkktLvfy.......kgrapkge.......ktdWvmheyrl 128
                 +++   +k+g+ vg k+tL++        ++++++g+       +++W+m ey l
  KFK27441.1 106 TTNIEDRKTGKIVGRKQTLTYTrsddnpkRQKREDGSsvivpgsESSWIMTEYML 160
                 865555558999**********77766652233332234444449********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.727177IPR003441NAC domain
PfamPF023653.9E-139159IPR003441NAC domain
SuperFamilySSF1019411.05E-209175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSDYYEEDEG IHFEPYDDEL IKDYLIPELK GESCYDFIVH KNVYDMEAWL LDHNMDPFFQ  60
KNEWYYFVTR VQVSEKKIGY GKQAKRKIAG DNNDGIERGN WKANATTNIE DRKTGKIVGR  120
KQTLTYTRSD DNPKRQKRED GSSVIVPGSE SSWIMTEYML PEGENFQELV LCKIKIIKSK  180
KNHYEASTST STSTYHHHES VLASSSSSEA CSSGTSIAAG EGNAPLGHGS CVPTGSEEER  240
GWIQYFDLPV NEGLNGLIAA GEGNAPLQIN EHVSALDTSS EKQPINETHR EESENLGPKS  300
TQKVLKELEE SLLGVNEPGL RVEEDKEELL IYNKEELEDL FNQFAALCPT KTSHTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GC390.0A0A087GC39_ARAAL; Uncharacterized protein
STRINGA0A087GC390.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.14e-13NAC domain containing protein 88