PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27472.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 607aa    MW: 69221.2 Da    PI: 5.8539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27472.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.31.3e-1202215951374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lL++cA+av+s d+++a+  L++++ ++s++gd +qRla+yf+eAL+ar+++  ++ ++ a+p+s+ts   +++ l+a+klf++++Pi+ + +++a
  KFK27472.1 221 LRSLLMQCAQAVASFDQRRATDKLKEIRAHSSSNGDGIQRLAFYFAEALEARITGiISPPVSTAFPSSTTS---MVDILQAYKLFVHTCPIYVIDYFAA 316
                 689****************************************************7788888888888888...9************************ PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 N+ I+e + ++ ++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p++g   ++++eetg+rL++f++++ vpfefn+ +ak++e+++l+eL 
  KFK27472.1 317 NKSIYELALNSPKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQAGfrPSDRVEETGRRLKRFCDKFSVPFEFNF-IAKKWESITLDELT 414
                 ******************************************************9*****************************.7************* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgr 292
                 ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++  e+   +r+ +Erell r
  KFK27472.1 415 INPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFREALFHFSSLFDMYDTTIQGEEeyVHRALLERELLVR 513
                 *******************************************************************************988876789*********** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++++v++ eg er++r et+++Wr r+ +aGFkp+++s++++k+ak +++k + + + ++++++++++gWk+r ++++S+W+
  KFK27472.1 514 DAMSVISSEGVERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVKKRYHKDFLIDSDNHWMLQGWKGRVIYAFSCWK 595
                 *****************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.055195575IPR005202Transcription factor GRAS
PfamPF035144.4E-118221595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDALLQVDGF RFENGSGSGS CCKPRNNLES ENNLYSNFDT PETQNQSSSS SPTDSPPICL  60
DNSPVLKYIN DMLMDEEEDS LGQTRLLQDT LALQAAERSF YEILQPQSPD SDHNPSSSDQ  120
NSNDPSMETY STQRKYRHRN DEEDELESGR RNKQPAIFVS EMEELAAKME HVLLVCKANQ  180
EGEEEVKQSA VITKQSIPNR AGRAKGSSNR SKTRKTDTVD LRSLLMQCAQ AVASFDQRRA  240
TDKLKEIRAH SSSNGDGIQR LAFYFAEALE ARITGIISPP VSTAFPSSTT SMVDILQAYK  300
LFVHTCPIYV IDYFAANKSI YELALNSPKL HIIDFGVLYG FQWPCLLLAL SKRPGGPPML  360
RVTGIELPQA GFRPSDRVEE TGRRLKRFCD KFSVPFEFNF IAKKWESITL DELTINPGET  420
TVVNCIHRLQ YTPDETVSLD SPRDTVLKLF RDINPDLFVF AEINGTYNSP FFMTRFREAL  480
FHFSSLFDMY DTTIQGEEEY VHRALLEREL LVRDAMSVIS SEGVERFARP ETYKQWRVRI  540
LRAGFKPATI SKQIMKEAKE IVKKRYHKDF LIDSDNHWML QGWKGRVIYA FSCWKPAEKL  600
TDNHVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4422759625380Protein SCARECROW
5b3h_A3e-4422759624379Protein SCARECROW
5b3h_D3e-4422759624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400957.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A087GC700.0A0A087GC70_ARAAL; Uncharacterized protein
STRINGA0A087GC700.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]