PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27696.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 310aa    MW: 35231.7 Da    PI: 6.0504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27696.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.2e-28112173159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs++dp ++ei Y+g H ++
  KFK27696.1 112 LDDGFSWRKYGQKDILGAKFPRGYYRCTHRksqGCEATKQVQRSDQDPILFEISYRGIHSCS 173
                 59***************************98899*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26109174IPR003657WRKY domain
SuperFamilySSF1182902.48E-24111174IPR003657WRKY domain
PROSITE profilePS5081122.022112171IPR003657WRKY domain
SMARTSM007742.1E-40112174IPR003657WRKY domain
PfamPF031067.2E-26113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEKKSSSEEW EKMKKEINEL MIEGRDYAHQ FGSASSQETR EHLAKKILES YHKSLTILNY  60
SGEPDQDSLG EGSPNSDDSD LEPRIVKSSK KSMPRWTEKV RITPEAGVDR SLDDGFSWRK  120
YGQKDILGAK FPRGYYRCTH RKSQGCEATK QVQRSDQDPI LFEISYRGIH SCSQAANVGS  180
TIRVQNLEPN QNQNQEVLEN VKESLDTDHR NYNHQSHLHQ TLHYPLPSTP ILESNHAYML  240
QMRDHNNEFF GTTSMSSDLG TNVSCDFLAS RDVGSASHST SNSPSTVRLE SPFESFDPNY  300
PFGGFGEFYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-191111701374Disease resistance protein RRS1
5w3x_D3e-191111701374Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27696.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394669.11e-176probable WRKY transcription factor 30
SwissprotQ9FL621e-166WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLA0A087GCU40.0A0A087GCU4_ARAAL; Uncharacterized protein
STRINGA0A087GCU40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-148WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]