PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27750.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 182aa    MW: 21281.3 Da    PI: 5.7847
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27750.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.68.1e-191197293
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHS..TT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyF..khsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93
                  F   lye+++d+++++++swse+gnsf+v++e+ef k v+p++F  k + + SF+  L  YgF+kv+++++         e++++ F +gk +l
    KFK27750.1 11 FPIVLYEMVDDPSTNSIVSWSESGNSFIVWKESEFCKVVVPSVFqrKEEDLFSFTIRLYNYGFTKVESSDEL-------YEYTNDCFVRGKPDL 97
                  56679***************************************44456789****************9976.......*********999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-24497IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-137100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.9E-201197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-171197IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-61134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-66476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDRKENRNRF FPIVLYEMVD DPSTNSIVSW SESGNSFIVW KESEFCKVVV PSVFQRKEED  60
LFSFTIRLYN YGFTKVESSD ELYEYTNDCF VRGKPDLTRP KSFVFKTAPE MQRVMDRHKE  120
MVLARCLLGH EILANYLLSI WDRGSVRLQT GHKVSDMEEE TGKEALQIDI LRLGSAPMRP  180
AF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.22e-27heat stress transcription factor A-4a
TrEMBLA0A087GCZ81e-133A0A087GCZ8_ARAAL; Uncharacterized protein
STRINGA0A087GCZ81e-134(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.17e-19HSF family protein