PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27825.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 204aa    MW: 22504 Da    PI: 6.9758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27825.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182676155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  KFK27825.1 26 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 76
                68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-132676IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-212785IPR016177DNA-binding domain
PROSITE profilePS5103223.6572784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-312785IPR001471AP2/ERF domain
SMARTSM003806.5E-342790IPR001471AP2/ERF domain
CDDcd000181.03E-312886No hitNo description
PRINTSPR003674.5E-102839IPR001471AP2/ERF domain
PRINTSPR003674.5E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MIASKNSSQE TKGEKTKPVQ DSGKHPVYRG VRKRNWGKWV SEIREPRKKS RIWLGTFPSP  60
EMAARAHDVA ALSIKGASAI LNFPDLAGSF PRPNSLSPRD IQAAALKAAH MESPSSSSSS  120
FTFSSSHSSS SLESLVSSSR TESEELGEIV KLPSLGSSYD GTTQLGNEFI FSDPVDFWDY  180
EMIPSFSEGL LSRDWDLQGL YNYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1824841172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27825.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394830.12e-99ethylene-responsive transcription factor TINY
SwissprotQ391273e-95TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A087GD731e-146A0A087GD73_ARAAL; Uncharacterized protein
STRINGA0A087GD731e-146(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-92ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]