PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27827.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 337aa    MW: 37331.5 Da    PI: 5.0912
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27827.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.4e-18223257135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  KFK27827.1 223 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 257
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.0E-831312IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-17217267IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004217253IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-16219281No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.04E-15222269No hitNo description
PfamPF003201.2E-15223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEEAHEFFH TADQFVVDDL LVDFSNDDDE ENDVIVDSDG SNTTTPAVAD SSNSSFSVGG  60
LTNFHGDTSF SGDLCVPSDD LAELEWLSNF VEDSFSAEDV QKLQLISGLK TRPEPKAESS  120
ELSPNSSSPI FTTDVSVPAK ARSKRSRPAA GNWASGGLLM EAVYDNPFTG ETILSSHHLS  180
PPTSPPPPPP SMAHTWKKQA IEGXXXXXXX XXXXXXXXEE RRCLHCATDK TPQWRTGPMG  240
PKTLCNACGV RYKSGRLVPE YRPASSPTFV LAKHSNSHRK VMELRRQKEM SRAHHEFIHH  300
HHTTTTTTDT AMIFDVSSDG DDYLIHHNIG PDYRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151105.10.0PREDICTED: GATA transcription factor 12
RefseqXP_013643773.10.0GATA transcription factor 12
SwissprotP697811e-157GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A087GD750.0A0A087GD75_ARAAL; GATA transcription factor
STRINGA0A087GD750.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-114GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]