PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27860.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 373aa    MW: 41445.1 Da    PI: 9.2582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27860.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-141495194
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                ffk l     +k++ +++p  f +++ +gk+e++    + d s  +W+v++  ++ +    lt GW++F+ a++L++gD++ F++dg+    l++
  KFK27860.1 14 FFKPL--LPGFKTH-ITIPEAFYSKYlEGKEEGNAATLISDASDITWKVTV--DGLR----LTHGWEKFALAHDLRVGDILAFRHDGN----LMF 95
                77777..7788888.9**********988888877777788**********..6666....***********************8774....333 PP
2B3452e-14147232997
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++l+++   l+k f+++ g++k ++ +++l  e+grs ++ l y ++s+r+ +++GW+ F++ ng k+g f+ F+l++ +++++v+++f
  KFK27860.1 147 SNLRTD-SNLSKGFTTSSGLSKLCN-EIILVGETGRSSTIGLVYHNSSNRFCFRGGWRAFCRTNGHKAGGFLRFTLVS-NGKTPVLRIF 232
                 445554.5789****9999998775.**************************************************98.6777999988 PP
3B355.51e-17274361493
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 v ++ ++lk++ l lp +  + + ++k + +++ l++++gr+W+++l+ r+ s+r+++t GW +F+++ng k+g +++Fkl+++ +++lv
  KFK27860.1 274 VSVTVNNLKEDKLFLPSRVSRPNIKNK-GLQKIDLMNKQGRTWTLTLKNRRLSDRFFITHGWTSFCEENGQKAGCSFTFKLVRH-GTNLV 361
                 567889999**********99995555.5569***************99*******************************9984.43333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-187105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-188103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39211103IPR003340B3 DNA binding domain
CDDcd100175.23E-1512100No hitNo description
SMARTSM010195.9E-1614103IPR003340B3 DNA binding domain
PfamPF023624.2E-101596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-14133230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-14135230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.192138235IPR003340B3 DNA binding domain
SMARTSM010192.4E-15139235IPR003340B3 DNA binding domain
CDDcd100174.93E-14139233No hitNo description
PfamPF023623.7E-12145232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17267364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15270363IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.902271367IPR003340B3 DNA binding domain
SMARTSM010196.6E-20272366IPR003340B3 DNA binding domain
PfamPF023623.4E-16273361IPR003340B3 DNA binding domain
CDDcd100174.59E-13279363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MATTLFSSPA NPNFFKPLLP GFKTHITIPE AFYSKYLEGK EEGNAATLIS DASDITWKVT  60
VDGLRLTHGW EKFALAHDLR VGDILAFRHD GNLMFHVTPF GPGSCEILYS HDNDQNHAGE  120
LAGSSKAKKQ NPIEDETCIV VVPVTASNLR TDSNLSKGFT TSSGLSKLCN EIILVGETGR  180
SSTIGLVYHN SSNRFCFRGG WRAFCRTNGH KAGGFLRFTL VSNGKTPVLR IFPLERTVDS  240
TRDHVSAEVK SLEPAKEKKN VESLSLSDDS SFVVSVTVNN LKEDKLFLPS RVSRPNIKNK  300
GLQKIDLMNK QGRTWTLTLK NRRLSDRFFI THGWTSFCEE NGQKAGCSFT FKLVRHGTNL  360
VLLMNETLRE EGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405883.21e-138B3 domain-containing protein REM-like 3
SwissprotF4KFT61e-119REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLA0A087GDA80.0A0A087GDA8_ARAAL; Uncharacterized protein
STRINGA0A087GDA70.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.11e-110B3 family protein