PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK28306.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SRS

Protein Properties

Length: 341aa MW: 36122.7 Da PI: 7.8554

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK28306.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.3	8e-72	126	273	3	152
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 sg+ sCqdCGnqakkdC+h+RCRtCCksrg++CathvkstWvpaakrrerqqqla+ ++ ++++ e+ +kr+re+ +++++l +t+++s++ ++ l+ KFK28306.1 126 SGGPSCQDCGNQAKKDCSHMRCRTCCKSRGLECATHVKSTWVPAAKRRERQQQLASGQQ-QTQTPCESVPKRQREHIPARSTSLVCTRIPSNN-NSGLD 222 68889***********************************************99855.556678999******************997.5599 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++P+evss+avfrcvrvssvddge+e+aY+tavsigGhvfkGiLydqG+ KFK28306.1 223 VGNFPPEVSSPAVFRCVRVSSVDDGEDEYAYKTAVSIGGHVFKGILYDQGP 273 **************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.5E-65	128	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	130	172	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.2E-27	226	273	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASFFSLGNG GGGRGGSNHE HHTPNTSNPS PSAAESWLWC RNPNPNANAN ANPNAAGGGD 60 IASSYKGSLE LWQHPNNQDI IYQQQQQQQR LDLYTSAAGL GVGPSNRSLI ETSAAALMMM 120 RSDSGSGGPS CQDCGNQAKK DCSHMRCRTC CKSRGLECAT HVKSTWVPAA KRRERQQQLA 180 SGQQQTQTPC ESVPKRQREH IPARSTSLVC TRIPSNNNSG LDVGNFPPEV SSPAVFRCVR 240 VSSVDDGEDE YAYKTAVSIG GHVFKGILYD QGPVTERTSS GGGLNLITTG PSASSSSPNL 300 SCNNGVVGST SDHYIDPASL SYPTPINSFV TGTHFFSNPG S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK28306.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280764.1	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	1e-176	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A087GEK4	0.0	A0A087GEK4_ARAAL; Uncharacterized protein
STRING	A0A087GEK4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-151	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]