PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28350.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24860 Da    PI: 6.2976
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28350.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1969121456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++t+eq++ Le  F ++r++   ++e++A +lgL+ rqV vWFqNrRa++k
  KFK28350.1  69 KRKLTDEQVNMLEYSFGNERKLESGRKEKIAGELGLDPRQVAVWFQNRRARWK 121
                 4589************************************************9 PP
2HD-ZIP_I/II120.77.4e-3968159293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+l++eqv++LE sF +e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+ktk++E++y++Lk+++d+++  +++Le++v eL+e+l++
   KFK28350.1  68 RKRKLTDEQVNMLEYSFGNERKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKTKKIEEEYAKLKSQHDTVVLGQCQLESQVLELTEQLSQ 159
                  8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-1766127IPR001356Homeobox domain
SuperFamilySSF466895.13E-1766124IPR009057Homeodomain-like
PROSITE profilePS5007115.98568123IPR001356Homeobox domain
CDDcd000861.72E-1468124No hitNo description
PfamPF000461.1E-1669121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-1970129IPR009057Homeodomain-like
PRINTSPR000312.1E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000312.1E-5103119IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDQMVIGSQV YPYTVQTQHS HCIIMNQIDG SSSLSGEGSK PVVKRRRKRR SKDSSATNDD  60
DVAGIMLRKR KLTDEQVNML EYSFGNERKL ESGRKEKIAG ELGLDPRQVA VWFQNRRARW  120
KTKKIEEEYA KLKSQHDTVV LGQCQLESQV LELTEQLSQA QNEIRKLSER LEGMSTNSPS  180
SSLSIEVNDA PIDFEFVPET NYNIPFYMEY WDGLYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KRRRKRR
26671LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596522.11e-115PREDICTED: homeobox-leucine zipper protein ATHB-53 isoform X1
SwissprotQ9LVR01e-107ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A087GEP81e-160A0A087GEP8_ARAAL; Uncharacterized protein
STRINGA0A087GEP81e-161(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-109homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]