PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28360.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 575aa    MW: 63867.6 Da    PI: 4.4471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28360.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.5e-1122125753374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +++ +cA+ ++s d   a++++ r++e +s+ gdp++R+  yfteAL++rl+       ++++  + s   ++e + a+k+++++sP+ kf+hltaNqa
  KFK28360.1 212 KAIHDCARILES-DPDDASKAIIRIRESVSELGDPIERVGYYFTEALHNRLSP------DSVSEAPPS---VEELTVAYKTLNDASPYSKFAHLTANQA 300
                 678899997776.9999************************************......666666666...899999********************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++f+f + + + ++ l+ +++rv+
  KFK28360.1 301 ILEATENSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRISGIPAPSLGdsPEPSLIATGNRLRDFAKVLDLNFDFVP-ILTPIHLLNGSSFRVD 398
                 ***********************************77776**********99998999************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E+laVn++lql++lldes ++ +   + L+l ksl P vv++ e e+++n+  F++r+ +al++y a+f+sle kl r+seer+ vEr+l+gr+i+ 
  KFK28360.1 399 PDEVLAVNFMLQLYKLLDESPAIVD---TALRLAKSLDPMVVTLGEYEVSLNRVGFANRVKNALRFYFAVFESLEPKLRRDSEERVRVERVLFGRRISG 494
                 *******************999999...*********************************************************************** PP

        GRAS 297 vvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qa+ ll  ++ +d y++ e++  ++ l Wkd pL++vS+Wr
  KFK28360.1 495 LIGPEKTGnQRERMEEKEQWRVLMENAGFESVKLSNYAMSQANILLWSYNyDDSYSLVESKPGFIsLAWKDLPLLTVSSWR 575
                 ***99986699***************************************9999******999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.816184553IPR005202Transcription factor GRAS
PfamPF035142.6E-109212575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NPLGFGLSGS  60
GFTDPFTGTG DPNDSGFPFP NLDHHHPTTT SGVGFKLSDF DGGNGGEFES DEWMETLVDA  120
GDSAVAVDGH DCDTWQENPD FVIYGPDPFA TYPSRLSVPP SDLNRVSPIP IPPTLWTPSS  180
PISIPPPQQA TIDPETEDRD SPDFDLEPSL LKAIHDCARI LESDPDDASK AIIRIRESVS  240
ELGDPIERVG YYFTEALHNR LSPDSVSEAP PSVEELTVAY KTLNDASPYS KFAHLTANQA  300
ILEATENSNK IHIVDFGIVQ GIQWPALLQA LATRSSGKPT QIRISGIPAP SLGDSPEPSL  360
IATGNRLRDF AKVLDLNFDF VPILTPIHLL NGSSFRVDPD EVLAVNFMLQ LYKLLDESPA  420
IVDTALRLAK SLDPMVVTLG EYEVSLNRVG FANRVKNALR FYFAVFESLE PKLRRDSEER  480
VRVERVLFGR RISGLIGPEK TGNQRERMEE KEQWRVLMEN AGFESVKLSN YAMSQANILL  540
WSYNYDDSYS LVESKPGFIS LAWKDLPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1482105754375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393872.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A087GEQ80.0A0A087GEQ8_ARAAL; Gras family transcription factor
STRINGA0A087GEQ80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]